Synthesis and characterization of SiPc-ddCPP
As a macrocyclic conjugated planar architecture, phthalocyanine tend to employ face-to-face H-aggregation. Although the H-aggregates favor photothermal effect through non-radiative vibration relaxation, they are unstable in physiological environment due to the weak π-π interaction within the aggregate, leading to reduced PTT therapeutic efficiency. In addition, H-aggregation will induce blue-shifted absorption and quenching of both fluorescence and ROS generation, which not only inhibits the PDT effect but also weaken the tissue penetration by light. This competition nature between PDT and PTT greatly hinders the realization of their synergistic therapeutic effect. Our recent studies on phthalocyanine based photothermal materials indicated that the intramolecular energy transfer between different chromophores could significantly increase photothermal effect without quenching of fluorescence56. Herein, to achieve combined PDT-PTT effect, amide-bond connected hybrid oligomer (SiPc-ddCPP) featuring orthogonal configuration between silicon phthalocyanine and porphyrin was constructed with expectation of enhanced PTT effect without quenching of PDT and fluorescence. Firstly, starting material of SiPc-NH2 was synthesized by substitution of SiPcCl2 with 2-(2 aminoethoxy) ethanol using previously reported method57,58. Subsequently, SiPc-ddCPP was constructed between SiPc-NH2 and ddCPP through coupling of -NH2 and -COOH by EDC/NHS conjugation procedure with the SiPc-NH2/ddCPP molar ratio of 2:1. The reaction mixture was successively purified by dialysis in DMF and H2O (molecular weight cutoff: 1000) to remove unreactive starting materials and conjugation reagents. Finally, SiPc-ddCPP was obtained by freeze-drying as dark powder (Scheme 1). It worth to mention, after several attempts, optimal particle size of SiPc-ddCPP (~100 nm) could be obtained at the SiPc-NH2/ddCPP molar ratio of 2:1, which is used for the following biological application studies.

Synthesis. Synthetic procedure of SiPc-ddCPP.
Gel permeation chromatography (GPC) was used to determine the molecular weight and purity of SiPc-ddCPP. It can be seen from the outflow curve of GPC (Fig. 2a), the compounds were separated out at ~17 min, shown as a narrow sharp peak, which is corresponding to the molecular mass of Mwmax ~ 5200 in the molecular weight distribution curve (Fig. 2b). Accordingly, the condensation number in SiPc-ddCPP is calculated to be n ≈ 4. Atomic absorption spectrum (AAS), a method to qualitative and quantitative analysis of element by its characteristic absorbance, was used to further evaluate the purity of SiPc-ddCPP. The Si content was detected to be 0.2825 mg L-1 in SiPc-ddCPP (1 μM per unit) with a small 0.53% deviation from the theoretical value of 0.2810 mg L-1, showing the good purity of SiPc-ddCPP (Supplementary Fig. 2). The particle size distribution of SiPc-ddCPP in H2O was detected by dynamic light scattering (DLS) method. As shown in Fig. 2d, the particle size of SiPc-ddCPP is ca.100 nm, locating at the optimal particle range for biological studies. In addition, thermogravimetric analysis (TG) shows that SiPc-ddCPP start to decompose at 311 °C and exhibit the good thermostability of SiPc-ddCPP.

The (a) effluent curve and (b) molecular weight distribution map of SiPc-ddCPP in GPC; (c) TG curve of SiPc-ddCPP; (d) DLS analysis of SiPc-ddCPP in H2O.
The bond formation was characterized by Fourier transform infrared (FT-IR) spectra, Raman spectroscopy and X-ray photoelectron spectroscopy (XPS). As shown in FT-IR spectrum of SiPc-ddCPP, the νC=O(OH) absorption at 1692 cm-1 from ddCPP disappeared and replaced by the absorption at 1624 cm−1 attributed to νC=O(NH), indicating the successful formation of amide bond between SiPc and ddCPP. The Raman spectra of SiPc-NH2, ddCPP and SiPc-ddCPP are compared in Fig. 3b. A superimposing of Raman signals of SiPc-NH2 and ddCPP was observed in SiPc-ddCPP spectrum and the weak signals of ddCPP were overlapped by that of SiPc-NH2, indicating the coexistence the two components. The XPS spectrum of SiPc-ddCPP also exhibit the photoelectrons of Si 2p, C 1 s, N 1 s, and O 1 s, coming from both SiPc-NH2 and ddCPP, further confirming the successful synthesis of the hybrid oligomer between the two components (Fig. 3).

a FT-IR spectra, (b) Roman spectra and (c) XPS spectra of SiPc-NH2, ddCPP and SiPc-ddCPP.
Moreover, the covalent amide bond formation was further characterized by comparison the core-level high-resolution photoelectrons spectra of C 1 s and N 1 s between SiPc-NH2/ddCPP and SiPc-ddCPP. The N 1 s high-resolution spectrum of SiPc-NH2 can be curve-fitted three peaks corresponding to nitrogen functional groups of C = N (399.05 eV), C-N (400.60 eV), and N-H (402.29 eV). For comparison, the N 1 s high-resolution spectra of SiPc-ddCPP fit four peaks corresponding to the nitrogen functional groups of C = N (398.30 eV), C-N (399.61 eV), N-H (400.71 eV) and O = C-N (403.04 eV), respectively. The appearance of new peak of O = C-N (403.04 eV) is a good proof for the formation of amide bonds. In addition, the high-resolution electronic spectrum of C 1 s were also analyzed. The C 1 s high-resolution spectrum of ddCPP was fitted with five peaks. They correspond to the carbon functional groups of C-C/C = C (284.60 eV), C-N/C = N (285.90 eV), C-O (286.62 eV), C = O (288.19 eV), O-C = O (289.66 eV), respectively. Contrastively, the C 1 s high-resolution spectrum of SiPc-ddCPP was also fitted with five peaks. They correspond to the carbon functional groups in C-C/C = C (284.64 eV), C-N/C = N (285.93 eV), C-O (287.08 eV), C = O (288.88 eV) and N-C = O (290.51 eV). The O-C = O (289.66 eV) peak belonging to ddCPP disappears and instead by the N-C = O (290.51 eV) peak of SiPc-ddCPP, which strongly proves the formation of amide bond (Fig. 4).

N 1 s XPS spectra of (a) SiPc-NH2 and (b) SiPc-ddCPP; C 1 s XPS spectra of (c) ddCPP and (d) SiPc-ddCPP.
The fluorescence and UV-Vis absorption spectra were performed in both DMF and aqueous solution for comparison. As shown in Fig. 5, the absorption curve of SiPc-ddCPP in DMF shows the characteristic peaks from monomeric SiPc and ddCPP, indicating the coexistence of both chromophores. In addition, the absorption peaks of ddCPP fall right into the absence region of Pc, resulting in a fully absorption spectrum ranging from ultraviolet to NIR region. Due to the existence of ethylene glycol linkage chains in SiPc-ddCPP, along with its orthogonal structure, excellent dispersity in aqueous solutions was observed. The characteristic absorption of SiPc and ddCPP can be observed in H2O and biological PBS for SiPc-ddCPP, revealing its good solubility and the advantage of orthogonal structure of SiPc-ddCPP to prevent π-π aggregation in water. Comparing to the absorption in DMF, a more than 3 times higher NIR absorption can be detected due to its relatively less dispersion in aqueous environment. However, in turn, this is favorable to the NIR photothermal potential for treatment of deep-seated infections. The excitation-emission relationship of fluorescence is an indirect method to detect intramolecular energy transfer. As shown in Supplementary Fig. 3, intense fluorescence attributed to SiPc (~675 nm) could be detected for SiPc-ddCPP under excitation by either SiPc or ddCPP absorption, strongly manifesting the energy transfer from ddCPP to SiPc within SiPc-ddCPP. At equivalent concentration, the relative lower fluorescence intensity of SiPc-ddCPP than free SiPc-NH2 to further evidenced the intramolecular energy loss during transfer process within SiPc-ddCPP. Furthermore, both the absorption and fluorescence intensities are proportional concentration dependent, indicating the good purity and stability of SiPc-ddCPP in solution.

a UV-vis absorption of equivalent SiPc-ddCPP, ddCPP, and SiPc-NH2 in DMF; UV-vis absorption of SiPc-ddCPP at different concentrations in (b) DMF, (c) H2O and (d) PBS.
Time-resolved fluorescence is employed as direct method to further explore the intramolecular energy exchanges. It can be seen from Supplementary Fig. 4, the fluorescence lifetime of SiPc-NH2 and ddCPP are 6.59 ns and 11.05 ns, respectively, while the fluorescence lifetime of SiPc-ddCPP is significantly reduced to 2.95 ns, due to the energy transfer between the two chromophores.
Singlet oxygen (1O2) generation
The effectiveness of photodynamic therapy is the capability to produce singlet oxygen (1O2). Indirect method using DPBF as 1O2 trapping agent was used to evaluate the photodynamic properties of SiPc-ddCPP. It can be seen in Fig. 6, with coexisting of SiPc-ddCPP, the absorption of DPBF at 415 nm gradually reduces along with the irradiation time by red light (λ > 610 nm), showing 1O2 is continually generated. For comparison, the 1O2 generation efficiencies in NIR region was also detected under irradiation by NIR light (λ = 750±10 nm) and it was found that 1O2 could also be generated by SiPc-ddCPP. These data clearly shows that the orthogonal structure of SiPc-ddCPP is beneficial to 1O2 generation and photodynamic therapy. The singlet oxygen yield of SiPc-ddCPP was calculated to be ΦΔ = 0.17 using ZnPc as reference, which is less than half of that of SiPc-NH2 (ΦΔ = 0.37), due to the energy exchange induced nonradiative heat relaxation caused reduced intersystem crossing pathway. In addition, type II mechanism was determined to be the main PDT pathway for SiPc-ddCPP (Supplementary Fig. 5).

UV-vis absorption spectra for the determination of 1O2 from SiPc-ddCPP irradiated by (a, c) red light (λ > 610 nm), (b, d) NIR light (λ = 750 ± 10 nm) in DMF (a, b) and water (c, d).
Photothermal properties of SiPc-ddCPP
The photothermal properties of SiPc-ddCPP was tested under both 671 nm and 808 nm laser irradiation to evaluate the photothermal effect from red to NIR region. The strong NIR absorption of SiPc-ddCPP is conducive to convert NIR light into heat for photothermal therapy. To obtain the instinct photothermal response, SiPc-NH2, ddCPP, and SiPc-ddCPP were compared at low concentration. Under the same conditions (808 nm), the temperature increase of SiPc-ddCPP (ΔT ≈ 25.3 °C) is much higher than that of SiPc-NH2 (ΔT ≈ 16.7 °C) and ddCPP (ΔT ≈ 3.2 °C), strongly certifying that SiPc-ddCPP is an excellent NIR photothermal agent. Due to the absorption absence in NIR region, the temperature of ddCPP remains almost unchanged as control H2O (Fig. 7a).

a Thermal images of equivalent SiPc-NH2, ddCPP, SiPc-ddCPP in deionized water under 808 nm laser irradiation (3.5 W cm-2) and the corresponding time-dependent photothermal curves; (b) thermal images of SiPc-ddCPP at different concentrations under 808 nm laser irradiation (3.5 W cm-2) and the corresponding time-dependent photothermal curves; (c) thermal images of SiPc-ddCPP at different concentrations under 671 nm laser irradiation (3.5 W cm-2) and the corresponding time-dependent photothermal curves; (d) thermal images of SiPc-ddCPP (30 μM) at different 808 nm laser irradiation and the corresponding time-dependent photothermal curves.
In contrast, SiPc-ddCPP also shows excellent photothermal response at 671 nm due to its high absorption in red region, which is comparable to the photothermal heating at 808 nm. The temperature of SiPc-ddCPP readily increase up to 65 °C under either 671 nm or 808 nm laser irradiation, exceeding the photoablation limit (50 °C) of living cells or bacteria, which convincingly show the remarkable PTT potential of SiPc-ddCPP from red to NIR region. In addition, the photothermal heating of SiPc-ddCPP was positively correlated with concentration and laser power as shown in Fig. 7. All these results exhibit that orthogonal structured SiPc-ddCPP has excellent photothermal capability for PTT from red to NIR region.
Photothermal stability and photothermal conversion efficiency
An excellent photothermal material should not only have good photothermal response and near-infrared absorption, but also have certain photostability. The photothermal stability of SiPc-ddCPP was verified by an experimental method of repeated heating/cooling cycles under high laser power irradiation (3.5 W cm-2). After five cycles, the heating rate and temperature increase of SiPc-ddCPP remain unchanged (Fig. 8a), which proves that SiPc-ddCPP possesses good photothermal stability and photobleaching resistance, making it a promising candidate for further clinical application. This is consistent with the good thermostability evaluated by thermogravimetric analysis as described above.

a The stability cycles of SiPc-ddCPP aqueous solution under 808 nm laser irradiation (3.5 Wcm-2); (b) photothermal response of SiPc–ddCPP in H2O under laser irradiation (808 nm, 1.25 W cm-2) then light shut off and (c) plot of the cooling time vs. the negative natural logarithm of the driving force temperature obtained from the cooling stage.
According to the published method58, the NIR photothermal conversion efficiency (η) of SiPc-ddCPP was calculated as 31.15%, which is much higher than most of inorganic and organic photothermal materials, such as Au nanorods59, Cu2-xSe nanomaterials60, MB61 and indocyanine green62. This efficient photothermal effect of SiPc-ddCPP in NIR region is in favor of PTT treatment of deep-seated infections. As aforementioned, both steady fluorescence and time-resolved fluorescence have successfully proved the efficient energy transfer between the two chromophores in SiPc-ddCPP. Hence, the enhanced non-radiative vibration relaxation and NIR absorption caused by intramolecular energy transfer in SiPc-ddCPP should jointly account for its remarkable photothermal conversion efficiency (Fig. 8).
Antibacterial experiment
Based on the good singlet oxygen generation and photothermal capability of SiPc-ddCPP, the PDT-PTT combined antibacterial studies were conducted on both Gram-positive bacteria (S. aureus) and Gram-negative anaerobic bacteria (E. coli). The colony counting method was used to evaluate the PDT, PTT or PDT-PTT antibacterial effect of SiPc-ddCPP. A 660 nm LED lamp and 808 nm laser were chosen for evaluated PDT and PTT efficacy, respectively. As can be seen from Fig. 9, SiPc-ddCPP is nontoxic to either S. aureus or E. coli bacteria in dark. In contrast, both S. aureus and E. coli could be efficiently inhibited under irradiation by either 660 nm LED lamp or 808 nm laser, showing its PDT and PTT antibacterial effect of SiPc-ddCPP. Due to an extra outer membrane of Gram-negative bacteria63, E. coli is less sensitive than S. aureus by either photodynamic or photothermal treatment, which is also observed by previously reported PDT/PTT antibacterial studies64. As expected, the combined application of PDT and PTT significantly improved the antibacterial efficacy and achieved 100% bacteria death of S. aureus and E. coli more easily than PDT or PTT alone (Fig. 9). Furthermore, the fluorescence of SiPc-ddCPP in S. aureus showed higher fluorescence intensity than that in E. coli, which was consistent with the antibacterial efficacy of SiPc-ddCPP, demonstrating that SiPc-ddCPP had a good affinity for bacteria and could be used for bacterial infections (Fig. 10).

Antibacterial activity images (upper) and corresponding statistical analysis (lower) of SiPc-ddCPP against (a) Gram-positive bacteria (S. aureus) and (b) Gram-negative bacteria (E. coli) under irradiation of PTT, PDT and PTT-PDT.

a S. aureus and (b) E. coli after being incubated with medium (upper) and SiPc-ddCPP (lower).
The biocompatibility of SiPc-ddCPP was evaluated on mouse embryonic osteoblasts (MC3T3) cells (Supplementary Fig. 6). A 95% survival rate in dark and 86% survival rate post-irradiation with the concentrations up to 10 μM were observed, demonstrating the good biocompatibility of SiPc-ddCPP to normal healthy cells due to the lower uptake by normal cell than bacteria within the time for infection treatment. The octanol–water partition coefficient (logP) of SiPc-ddCPP also shows its good hydrophilicity (Supplementary Table 1). These results systematically exhibit that SiPc-ddCPP can be rapidly taken up by bacteria but not by normal cells. In summary, SiPc-ddCPP has significant photodynamic/photothermal synergistic antibacterial effects and can be used as bactericide for in situ treatment of bacterial infections.